miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125432594|gb|EL444566.1|EL444566 CGGGCACCATATGAATATTCTAGCATAGACCTAGACTTTGTGTTTCTGATCCATCATTCTTCATACTCTTCACTTTAACC
CTAATTTCTTCTTCATATGCTTCTGCTCTACATCAACTTCAATTTCTTCAATTCAATTCATCAATTATGAGCTTCTTAAA
CCCTAACCACAGGCCATCAAGATCAACCACATCAGTTCACCATCTACCTACATCCAGCGTCGCATCAAGCTCATCATCAT
CTTCATCATCATCCTTATCCTTATCATCAACCAGTGCTCACAATTCGCGGAAAAAATGGTCGAATCTGTTGCCGCTGTTT
CTAGTTCTAGTGTTTATAGCGGAGATCAGTTTTTTAGGTCGCTTAGATTTGACTAAGAATGCTGATCTGCTCAATTCATG
GACCGAATCGTTCTATCAGTTTACCACGTCTTCATTTTCATCTAATTCGATTGATTCGATGGATGAGGATCCGATTTTGG
GGGTTTCTGGTGCAGTGGATTTAGGTGTTGGTGGTGGAGAGAGTTGTGAGGAGTGGTTGGAGAGAGTTGATTCTGTTGTG
TATGGTAGGGATTTTAAAAAGGAGCCTGTGCTTGTTACTGGTGCTGAGCAGGAGTGGAGGTCTTGTGCTGTGGAATGCAA
GTTTGGGTTTGACAATAATAAAAAGGCTGATGCTGCATTTGGGTTGCCCCATGGAGGTGGTACAGCTGGCGTTCTTCGAT
CAATGGAATCCGCTCAATACTATCCTGAGAATAATCTTGATTTGGCACGACGAANAGGGTACAACATCATTATGACAACC
AGTCTCTCCTCAGATGTTCCTGTTGGTTATTTTTCATGGGCAG




Most similar to sp|Q9LJK1|FUT11_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LJK1|FUT11_ARATH Glycoprotein 3-alpha-L-fucosyltransferase A
           OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1
          Length = 501

 Score =  175 bits (443), Expect = 4e-43
 Identities = 92/186 (49%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
 Frame = +3

Query: 288 RKKWSNLLPLFLVLVFIAEISFLGRLDLTKNADLLNSWXXXXXXXXXXXXXXXXXXXMDE 467
           ++K S  LP+ + LV I EI FL RLD     D L  +                      
Sbjct: 37  KRKVSTFLPICVALVVIIEIGFLCRLDNASLVDTLTHFF--------------------- 75

Query: 468 DPILGVSGAVDLGVGGG-ESCEEWLERVDSVVYGRDFKKEPVLVTGAEQEWRSCAVECKF 644
                   + DL VG G E C+EWLERVDSV Y RDF K+P+ ++G+ ++++SC+V+C  
Sbjct: 76  -----TKSSSDLKVGSGIEKCQEWLERVDSVTYSRDFTKDPIFISGSNKDFKSCSVDCVM 130

Query: 645 GFDNNKKADAAFGLPHGGGTAGVLRSMESAQYYPENNLDLARRXGYNIIMTTSLSSDVPV 824
           GF ++KK DAAFGL H  GT  ++RSMESAQYY ENNL  ARR GY+I+MTTSLSSDVPV
Sbjct: 131 GFTSDKKPDAAFGLSHQPGTLSIIRSMESAQYYQENNLAQARRKGYDIVMTTSLSSDVPV 190

Query: 825 GYFSWA 842
           GYFSWA
Sbjct: 191 GYFSWA 196